BtaEX0027961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101651003-101652800:+
Coord C1 exon
chr11:101651003-101651158
Coord A exon
chr11:101652250-101652356
Coord C2 exon
chr11:101652750-101652800
Length
107 bp
Sequences
Splice sites
3' ss Seq
AACGTGGGTTTGCTTTGCAGTTT
3' ss Score
7.68
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGCATCCTCCTCCCCCGGCCGGCTTTTCTGCAAGATGTTGGGGTTCTTGCAGCAGCCTGTGATGGTGACCGCTGAGGTGAACTTGAATATGGTAGCTCTGACCGCGGTGGGATTGCTGAGCCGACTATGGCAGCTTGCCTATCCAAGGGCCGTGGT
Seq A exon
TTTTGATGAAGTGTATTACGGGCAGTACATCTCTTTTTATATGAAGCGGATCTTCTTTTTGGATGGCAGTGGACCACCGTTTGGCCACATGCTTTTGGCCTTGGGAG
Seq C2 exon
GTTATTTAGGAGGATTCGATGGTAACTTTCTGTGGAACAGAATTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(25.3=51.2)
A:
PF0236613=PMT=FE(14.5=100)
C2:
PF0236613=PMT=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTTTCTGCAAGATGTTGG
R:
CTGCTCCAATTCTGTTCCACA
Band lengths:
188-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development