GgaEX6015259 @ galGal3
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6849698-6850860:+
Coord C1 exon
chr17:6849698-6849841
Coord A exon
chr17:6850104-6850210
Coord C2 exon
chr17:6850810-6850860
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTCTTGTGTTTCAGTTT
3' ss Score
11.1
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCTTGGACAGACCTTTGACAGGATGTTGGGATTTCTGAAGAACCCAGTTGTGGTTACTGCAGAGATAAATCTCAACCTTGTGGTGCTGACTGTCATGGGATTAATAAGCCGTCTATGGGGGCTTTCCTATCCACGTGCTGTTGT
Seq A exon
TTTTGATGAAGTTTATTACGGCCAATTTGTTTCCCTCTACATGAAGAGAATCTTCTTTGTGGATGACAGCGGCCCACCGCTTGGCCATATGCTGCTGGCTTTGGGAG
Seq C2 exon
GTTACTTAGGAGGATTTGATGGAAACTTCTTATGGAACAGGATTGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'5-3,'5-2,6-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(8.5=51.2)
A:
PF0236613=PMT=FE(14.5=100)
C2:
PF0236613=PMT=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGACAGACCTTTGACAG
R:
CAGCTCCAATCCTGTTCCATA
Band lengths:
195-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]