MmuEX0036347 @ mm9
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32092880-32096235:+
Coord C1 exon
chr2:32092880-32093031
Coord A exon
chr2:32095947-32096053
Coord C2 exon
chr2:32096185-32096235
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGTGTTTGTTTATAGTTT
3' ss Score
7
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGAGTCCTCCCGAGCTGGCTTTTCTGCAAAATGTTAAGATTTTTGAAACGGCCTCTAGTGGTGACTGTTGACATCAATTTGAACTTGGTAGCTCTGACTGGCCTGGGACTACTTACCCGACTATGGCAACTCTCCTACCCTCGGGCTGTGGT
Seq A exon
TTTCGATGAAGTATATTATGGGCAGTACATTTCCTTCTACATGAAGCGCATCTTCTTTCTGGATGACAGTGGGCCACCATTTGGCCACATGCTACTGGCCTTAGGAG
Seq C2 exon
GTTGGTTAGGGGGATTCGATGGTAACTTTCTGTGGAACCGAATTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(11.4=41.2)
A:
PF0236613=PMT=FE(14.5=100)
C2:
PF0236613=PMT=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTCCCGAGCTGG
R:
TGCTCCAATTCGGTTCCACAG
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: