DreEX6013225 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50465164-50465637:+
Coord C1 exon
chr5:50465164-50465294
Coord A exon
chr5:50465387-50465493
Coord C2 exon
chr5:50465587-50465637
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTGTACCACCTTTGTTTAGGTT
3' ss Score
8.36
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCAGGATTGAGCATGCAGTGTGTTAAACTGCCCGTCAGTGTGACAGTGGAGATAAATGTGCTGCTGCTGGCGGTTACAGCACTTGCCCTCTTTACTCGACTTTATGGCATTCACTTTCCCAAAGCTGTAGT
Seq A exon
GTTTGATGAGGTTTATTATGGACAGTTCCTGTCATTGTACATGAAGCAGGTTTTTTTCATAGATGAAAGCGGTCCTCCTTTTGGACACATGATACTTGCTTTAGGAG
Seq C2 exon
CGTATTTAGGAGGATTTGATGGCAACTTTGTTTGGAACAGAATTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(8.6=52.5)
A:
PF0236613=PMT=FE(14.8=100)
C2:
PF0236613=PMT=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGAGCATGCAGTGTGT
R:
TGCTCCAATTCTGTTCCAAACA
Band lengths:
179-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]