RnoEX6016424 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11254774-11257732:+
Coord C1 exon
chr3:11254774-11254925
Coord A exon
chr3:11257442-11257548
Coord C2 exon
chr3:11257682-11257732
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGTGTTTGTTTATAGTTT
3' ss Score
7
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTGTCCTCCCGAGCTTGCTTTTCTGCAAAATGTTGAGATTTTTGAAACGGCCTCTAGTGGTGACTATTGACATCAATTTGAATTTGGTGGCTCTGACTGTCCTGGGACTACTTACCCGGTTATGGCAACTCTCCTACCCTCGGGCTGTGGT
Seq A exon
TTTTGATGAAGTGTATTACGGGCAGTACATCTCCTTTTACATGAAGCGTGTCTTCTTCCTGGATGACAGTGGACCACCGTTCGGCCATATGCTGCTAGCCTTAGGAG
Seq C2 exon
GTTGGCTAGGAGGATTCGATGGGAACTTTCTGTGGAACCGAATTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(23.9=41.2)
A:
PF0236613=PMT=FE(14.5=100)
C2:
PF0236613=PMT=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCCCGAGCTTGCTTT
R:
CTGCTCCAATTCGGTTCCACA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]