BtaEX0027965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101662709-101663830:+
Coord C1 exon
chr11:101662709-101662829
Coord A exon
chr11:101663103-101663200
Coord C2 exon
chr11:101663717-101663830
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTGTGTGCCTGCCAGGCC
3' ss Score
7.53
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
CTGAGTGGAGTGCCCCTCCCGGACTGGGGCTTTCGGCAGCTGGAAGTGGTTGGGGAGAAGCTGTTTCGGGGCTACCACGAGAGCACTGTGTGGAACGTGGAGGAGCACCGCTACGGCAGGA
Seq A exon
GCCAGGAGCAGAAGGAGAGGGAGCTGGAGCTGCACTCCCCCACCCAGGTGGACATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCCGAGCTTCAG
Seq C2 exon
TGGCGGATGCTGACGGTGAGAAGTGACGATTCGGAACACAAGTACAGCTCCACGCCGCTGGACTGGGTCATGCTGGACACCAACATCGCTTACTGGCTGCACCCCAGGACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.242 C2=0.024
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(21.0=90.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGTTGGGGAGAAGCTG
R:
AGCCAGTAAGCGATGTTGGTG
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development