RnoEX0068251 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11267581-11268738:+
Coord C1 exon
chr3:11267581-11267701
Coord A exon
chr3:11268029-11268126
Coord C2 exon
chr3:11268625-11268738
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTGTCCTCTGTCAGGCC
3' ss Score
8.39
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
CTGAGCGGGGCTCACCTCCCTGACTGGGGATTTCGGCAGTTGGAGGTGGTTGGGGAGAAGTTGTCCCTCGGCCCCCACGAGAGCATGGTATGGAATGTGGAAGAGCACCGCTATGGCAGAG
Seq A exon
GCCATGAGCAGAAGGAGAGGGAGCTGGAGCTCCACTCACCCACGCAGCATGATATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCGGAGTTACAG
Seq C2 exon
TGGAAGATGCTGACGCTGAAGAATGAGGACTTAGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATTGCCTATTGGCTGCACCCCAGGACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'22-27,'22-26,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(21.0=90.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGGGGAGAAGTTGTCC
R:
TAGGCAATGTTGGTGTCCAGC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]