GgaEX1045221 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6231029-6232206:+
Coord C1 exon
chr17:6231029-6231149
Coord A exon
chr17:6231492-6231589
Coord C2 exon
chr17:6232093-6232206
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCAGTGGTGTTTTCTTCCAGGCC
3' ss Score
8.17
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTCAGTGGAGCATCTTTACCTGAGTGGGGATACCGGCAGCTGGAGGTGGTTGGAGAGAAGCTGTCCAAAGGCTACCACCAGAGCATGGTGTGGAATGTGGAAGAGCACAGATATGGGAAAA
Seq A exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq C2 exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(21.0=90.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTTTACCTGAGTGGGGA
R:
AGTCAAGAGCAGAGGAGCTGT
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]