GgaEX1045221 @ galGal3
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6858565-6859742:+
Coord C1 exon
chr17:6858565-6858685
Coord A exon
chr17:6859028-6859125
Coord C2 exon
chr17:6859629-6859742
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCAGTGGTGTTTTCTTCCAGGCC
3' ss Score
8.17
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTCAGTGGAGCATCTTTACCTGAGTGGGGATACCGGCAGCTGGAGGTGGTTGGAGAGAAGCTGTCCAAAGGCTACCACCAGAGCATGGTGTGGAATGTGGAAGAGCACAGATATGGGAAAA
Seq A exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq C2 exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(21.0=90.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTTTACCTGAGTGGGGA
R:
AGTCAAGAGCAGAGGAGCTGT
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]