DreEX0057067 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50477367-50478926:+
Coord C1 exon
chr5:50477367-50477487
Coord A exon
chr5:50478119-50478216
Coord C2 exon
chr5:50478813-50478926
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAACCCTGATATCTGTGCAGGTC
3' ss Score
6.67
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
CTTAGTGGAGCCTCTCTGCCAGAGTGGGGTTTTAAACAGCTGGAGGTGGTGGGTGATAAGATTTATAAAGGCTACCAGCAGACCGGCATGTGGAACGTGGAGGAGCACCGCTATGGCAGAA
Seq A exon
GTCAGGAACCAAAGGAAAGGGAGTTGGAGCTGAAGTCTCCTACTCACAGCGATGTCAACAAAAATCTCACATTTATGGCCAAATTTCTGGAACTGCAG
Seq C2 exon
TGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'18-20,'18-18,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.302 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(21.0=90.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGTGGGTGATAAGA
R:
TGCAATGTTGGTGTCCATTGTG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]