BtaEX0029446 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027809 | RABGAP1L
Description
Bos taurus RAB GTPase activating protein 1-like (RABGAP1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001103263]
Coordinates
chr16:57015969-57030035:+
Coord C1 exon
chr16:57015969-57016139
Coord A exon
chr16:57018106-57018298
Coord C2 exon
chr16:57029825-57030035
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCCTTTGTCTGTAGATA
3' ss Score
10.3
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGGATGTGGAAAGAGAAGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCATTACAGAAGGTTAGTGGGTCATCGGATTCTGTGACTACACTCAACAGTGAAGAATTTGTTTTGGTTCCTCAGCATGGAGGTGATACTTCTACAAAAGATGATGAAAAACCTGAACTGAAG
Seq A exon
ATAGTTTCTAATGGTGATGAACAACTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCGGAGAAGGGGCAAAGCAGCCTTCCTGTTGATTGTCCAAGTTCCAGTGAGATTTCAGACCATTCATTTGGAAATATTTCAGCCAGGCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCATCAAATACAG
Seq C2 exon
AAATTTCTACACCCAGACCATCTTCTCTAAGTGAAATACCTGAAGAGGATAGTGTTTTATTTAACAAACTGACCTATTTAGGATGTATGAAGGTTTCATCCCCACGTAATGAAGTGGAAGCTTTACGGGCAATGGCAACTATGAAATCTGCCAGTCAGCACCCGTTTCCTGTTACTCTGTATGTGCCAAATGTTCCAGAAGGTTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027809_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.923 C2=0.296
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(44.4=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCATCGGATTCTGTGAC
R:
CCATTGCCCGTAAAGCTTCCA
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development