DreEX6098577 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17287075-17290339:+
Coord C1 exon
chr22:17287075-17287256
Coord A exon
chr22:17288360-17288495
Coord C2 exon
chr22:17290132-17290339
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGCATTGTGTTTGTCTCAGATG
3' ss Score
8.46
5' ss Seq
ACGGTACAT
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTTGCAGCAGTAGTAGGCCGAGCGGCCGGTCTGTCCAGGCTATCATGGATGACAGCTCCTCTCTGGGCAGAGTGAGCGGCTCCACCGAATCAGTGTCCACCGTCACCAGCGAGGAGTTTGTGCTTGTGCCGCCCAGTGCCGGTGGATCACCGTCCAGCTCTGAGGGCAGACCCAGACTCAAG
Seq A exon
ATGTCGTGGAATGGGAGTGAGCAGCTGGAGCGGGCGATGGAGGAGGTGTTGGATGATGTTGCTGATGGAGCAGGAGCTGAACAGGAGAAGGGATGCACTCAGATCAGACCGCCCAGTCTGGACACAGCTCCACACG
Seq C2 exon
AATCCTCAGCAGCACTGCTCGAGAGTCCGACTGTCCCAGAGGAAGAGAGTGTTCAATTCAGTAAACTGTCCTATCTGGGCTGCACCTGGGTGAAGGCTCCACGCAGTGAGACGGAGGCCCAGAAAGCCATGGCTACCTTGAGGGCGGAGAGTGCCATTCCCATTCCCGTCATCCTCCATGTGCCCAACGGCTCCGACGGTTGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(38.4=68.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGCGAGGAGTTTGTG
R:
GAATGGGAATGGCACTCTCCG
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]