MmuEX0038441 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162665679-162671062:-
Coord C1 exon
chr1:162670883-162671062
Coord A exon
chr1:162669027-162669219
Coord C2 exon
chr1:162665679-162665889
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGCTCTGCCTTTAGATA
3' ss Score
9.87
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TTGTTCCAGGTGGATGTGGGCAGAGAGGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCGTTCCAGAAGGTTAGTGGGTCATCTGATTCTGTGGCCACACTGAACAGTGAAGAATTTGTTTTGGTTTCTCAGCACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
Seq A exon
ATAGCTTCCAATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCTGTTGATTGCCAAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCCGCCTCTCCAGTTAATTTTGGATCCATCTAATACAG
Seq C2 exon
AAATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTCCTGAAGAAGACAGTGTTCTCTTTAACAAGCTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAAGTGGAGGCTTTACGGGCCATGGCCACCATGAGAGCTTCCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCAGAAGGATCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.892 C2=0.225
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(38.4=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAGAGCTTCGTTCCAGA
R:
TTCACTGCGTGGGGAAGAAAC
Band lengths:
247-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: