RnoEX0073421 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78504187-78521909:-
Coord C1 exon
chr13:78521730-78521909
Coord A exon
chr13:78520025-78520217
Coord C2 exon
chr13:78504187-78504397
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGTCATGCTCTACCTTTAGATA
3' ss Score
9.8
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGTGCCAGGTGGATGTGGGCAGAGAGGTTTGCAGGGCTGAAATGGAGGTCAGAGCTTCCTTACAGAAGGTCAGTGGGTCACCTGATTCTGCGGCCACACTGAACAGTGAAGAGTTTGTTTTGGTTCCTCAGCACACAGATGACACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
Seq A exon
ATAGCTTCCAATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGGCAAAGCAGTCTACCTGTTGATGGCCAAGGATCCAGTGAGATTTCAGACCATTCCTTTGGAGATGTTCCAGCCAGCCAATCAAATAAACCACCTCTCCAGTTAATTTTGGATCCATCTAATACAG
Seq C2 exon
AAATTTCCACACCCAGACCATCTTCTCCAAGTGGATTTCCTGAAGAAGACAGTGTTCTCTTTAACAAGTTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGTAGTGAAGGGGAGGCTTTACGTGCAATGGCCACCATGAGAGCTTCCAGTCAATACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCAGAAGGATCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'5-11,'5-7,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=1.000 C2=0.296
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(38.4=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGGTCACCTGATTCTGC
R:
ATGGTGGCCATTGCACGTAAA
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]