GgaEX6043901 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7272001-7274961:-
Coord C1 exon
chr8:7274797-7274961
Coord A exon
chr8:7273302-7273494
Coord C2 exon
chr8:7272001-7272211
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACCTAATCTTCTACTTACAGGTG
3' ss Score
9.89
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGTCTGTGGCAGAAAGCTGCTGACCTGAGATGGAAGTCAGAACGTCGTTTAGCAAAGCCAGAAGAATTCCTGAAGCCGTATCCACATTAATTAACGAAGAATTTGTCGTGGTTCACCAGCAAACTGAGGACTCCTCTGGGAAAGATGCAAAACCTCAGCTAAAG
Seq A exon
GTGTTCTCAAATGGAGATGATCAGCTGGAGAAGGCAATGGAGGAGATACTGAGGGATTCTGAAAAAGACCAGAACAACTCCACTGCTCTCCCCGAAGGTTCCAGTGATGCATGCAGCCAGGCATCTGGACTTGGCTCAGCAGGTCAAACAAATCAGCCGTCCTTGCAACTTGTTTTAGACCCTTCTACTACAG
Seq C2 exon
AAGTGTCTGCACGAAGGTCATCTTCTCCCAGTGAACCCTTGGAAGAGGACAGTGTATTGTTTAACAAACTGACTTACCTGGGTAGCATGAAAGTGTCTGCCCCTCGGAATGAGCCAGAAGCTCTACGTGCCATGGCAAACATGAAATCCTCCAGTCAGGCCCCTCTATCTGTAACACTCTATGTTCCAAATGTTCCAGAAGGCTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=1.000 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(37.5=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGACCTGAGATGGAA
R:
CGAGGGGCAGACACTTTCATG
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]