GgaEX6043901 @ galGal3
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
NA
Coordinates
chr8:7606119-7609079:-
Coord C1 exon
chr8:7608915-7609079
Coord A exon
chr8:7607420-7607612
Coord C2 exon
chr8:7606119-7606329
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACCTAATCTTCTACTTACAGGTG
3' ss Score
9.89
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGTCTGTGGCAGAAAGCTGCTGACCTGAGATGGAAGTCAGAACGTCGTTTAGCAAAGCCAGAAGAATTCCTGAAGCCGTATCCACATTAATTAACGAAGAATTTGTCGTGGTTCACCAGCAAACTGAGGACTCCTCTGGGAAAGATGCAAAACCTCAGCTAAAG
Seq A exon
GTGTTCTCAAATGGAGATGATCAGCTGGAGAAGGCAATGGAGGAGATACTGAGGGATTCTGAAAAAGACCAGAACAACTCCACTGCTCTCCCCGAAGGTTCCAGTGATGCATGCAGCCAGGCATCTGGACTTGGCTCAGCAGGTCAAACAAATCAGCCGTCCTTGCAACTTGTTTTAGACCCTTCTACTACAG
Seq C2 exon
AAGTGTCTGCACGAAGGTCATCTTCTCCCAGTGAACCCTTGGAAGAGGACAGTGTATTGTTTAACAAACTGACTTACCTGGGTAGCATGAAAGTGTCTGCCCCTCGGAATGAGCCAGAAGCTCTACGTGCCATGGCAAACATGAAATCCTCCAGTCAGGCCCCTCTATCTGTAACACTCTATGTTCCAAATGTTCCAGAAGGCTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=0.917 C2=0.358
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(37.5=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGACCTGAGATGGAA
R:
CGAGGGGCAGACACTTTCATG
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]