BtaEX0029618 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61636673-61646479:+
Coord C1 exon
chr16:61636673-61636762
Coord A exon
chr16:61641255-61641347
Coord C2 exon
chr16:61646353-61646479
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTAAATCTTCCAGAAG
3' ss Score
8.5
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGCTTTTGGGTTGTTAGAGAGATTCTTCATGCTCAAACATTAAAAATTAGAGCAGAAGTTTTGAGCCACTATATTAAAACTGCTAAG
Seq A exon
AAGTTGTATGAGCTGAATAACCTTCATGCACTTATGGCGGTGGTTTCTGGCTTACAGAGTGCCCCAATTTTCAGGTTGACTAAAACATGGGCG
Seq C2 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAATTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCCTGCATTCCCTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.0=100)
A:
PF0061714=RasGEF=FE(15.5=100)
C2:
PF0061714=RasGEF=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGAGCAGAAGTTTTGAGCCACT
R:
AAATAGGGAATGCAGGGTGTCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development