MmuEX0038672 @ mm9
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158799572-158817311:-
Coord C1 exon
chr1:158817222-158817311
Coord A exon
chr1:158814664-158814756
Coord C2 exon
chr1:158799572-158799698
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTTAAATCTTCAGAAA
3' ss Score
8.8
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGCTTTTGGGTTGTAAGAGAGATTCTCCATGCTCAAACACTGAAAATAAGAGCAGAAGTTTTGAGCCACTATATTAAGACTGCTAAG
Seq A exon
AAACTATATGAACTTAACAACCTTCACGCACTTATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCGATTTTCCGGTTGACTAAGACGTGGGCG
Seq C2 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTTGCATTCCCTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=FE(15.4=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGCTCAAACACTGAA
R:
GCAAGGAGTCATCTTTAAGCTGC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: