MmuEX0038672 @ mm10
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:156869441-156887180:-
Coord C1 exon
chr1:156887091-156887180
Coord A exon
chr1:156884533-156884625
Coord C2 exon
chr1:156869441-156869567
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTTAAATCTTCAGAAA
3' ss Score
8.8
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGCTTTTGGGTTGTAAGAGAGATTCTCCATGCTCAAACACTGAAAATAAGAGCAGAAGTTTTGAGCCACTATATTAAGACTGCTAAG
Seq A exon
AAACTATATGAACTTAACAACCTTCACGCACTTATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCGATTTTCCGGTTGACTAAGACGTGGGCG
Seq C2 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTTGCATTCCCTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=FE(15.4=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGCTCAAACACTGAA
R:
GCAAGGAGTCATCTTTAAGCTGC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types