GgaEX1048068 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6659716-6666064:-
Coord C1 exon
chr8:6665975-6666064
Coord A exon
chr8:6662894-6662986
Coord C2 exon
chr8:6659716-6659842
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTGTATATTTTTGTTCTCAGAAA
3' ss Score
8.95
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GTAAGCTTCTGGGTAGTCAGAGAGATTCTGCATGCACAAACCTTAAAAATAAGAGCTGAGGTTTTGAGCCACTATATTAAAACTGCAAAG
Seq A exon
AAACTGTATGAGCTGAACAATCTGCACGCTCTTATGGCAGTTGTATCAGGCCTACAGAGTGCTCCTATCTTCAGACTGACTAAAACGTGGGCG
Seq C2 exon
TTACTGAGTCGGAAGGATAAAGCCACTTTTGAGAAGTTGGAGTATGTTATGAGTAAAGAAGATAATTACAAAAGGCTTAGAGATTATATCAGCAGCTTGAAGATGACTCCATGTATTCCCTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'15-19,'15-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=FE(15.5=100)
C2:
PF0061714=RasGEF=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTCTGCATGCACAAACCT
R:
TGGAGTCATCTTCAAGCTGCTG
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]