RnoEX0073790 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74485162-74491733:-
Coord C1 exon
chr13:74491644-74491733
Coord A exon
chr13:74490369-74490461
Coord C2 exon
chr13:74485162-74485288
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTCTTAAATCTTCAGAAA
3' ss Score
9.08
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGCTTTTGGGTTGTAAGAGAGATTCTCCATGCTCAGACCCTGAAAATAAGAGCAGAAGTTTTGAGCCACTATATCAAAACCGCTAAG
Seq A exon
AAACTATATGAACTCAACAACCTTCATGCTCTCATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCAATTTTCAGGTTGACTAAGACGTGGGCG
Seq C2 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAGTTAGAATATGTAATGAGTAAAGAAGACAACTACAAAAGACTCCGAGACTATATAAGTAGCTTAAAGATGACTCCTTGCATCCCCTACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'20-13,'20-12,23-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.0=100)
A:
PF0061714=RasGEF=FE(15.5=100)
C2:
PF0061714=RasGEF=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCTCAGACCCTGAAAA
R:
AGGGGATGCAAGGAGTCATCT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]