DreEX0060672 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16121047-16146047:-
Coord C1 exon
chr20:16145964-16146047
Coord A exon
chr20:16135075-16135167
Coord C2 exon
chr20:16121047-16121173
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTTTCTTCTTGCAGAAA
3' ss Score
12.54
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAGCTCTCTAGTTGTGGCTGGAACAAGAAGGAGAAGCACAGTTCAGCACCGAACGCAGTGGCCTTCACACGACGCTTCAACCAG
Seq A exon
AAACTGTGTGACATGAACAGTCTCCACGCAGTGATGGCAGTGGTATCTGCTCTACAGAGCGCCCCAATCTTCAGACTCACAAAGACATGGGCT
Seq C2 exon
CTTTTAAGTCGGAAGGACAAGGCCACGTTTGAGCGGTTGGAGTATCTGATGTCTAAAGAGGACAACTACAAACGTTTGAGGGATTACATCAGCAGCCAGAGCATGACATCCTGCATCCCGTATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519-'7-13,'7-10,9-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(47.4=100),PF0061714=RasGEF=PU(0.1=0.0)
A:
PF0061714=RasGEF=PD(3.5=6.5),PF0061714=RasGEF=FE(26.8=100)
C2:
PF0061714=RasGEF=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGCACAGTTCAGCAC
R:
CAGGATGTCATGCTCTGGCTG
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]