BtaEX0029700 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015232 | RAPGEFL1
Description
Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:HGNC Symbol;Acc:HGNC:17428]
Coordinates
chr19:41121196-41122210:+
Coord C1 exon
chr19:41121196-41121260
Coord A exon
chr19:41121586-41121640
Coord C2 exon
chr19:41121887-41122210
Length
55 bp
Sequences
Splice sites
3' ss Seq
CAGTTCTTGTCATCTCCCAGCAT
3' ss Score
4.76
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
ACCTGACTTTCCTGCACGAGGGAAGTAAGACCCTGGTAGATGGCTTGGTGAACATTGAGAAGCTG
Seq A exon
CATTCAGTGGCCGAAAAAGTGAGGACAGTCCGCAAATACCGGAGCCAGCCCCTTT
Seq C2 exon
GCCTTGATATGGAGGCCTCCCCACATCACCTGCAGACCAAGGCCTACGTGCGCCAGTTCCAGGTCATCGACAACCAGAACCTCCTCTTCGAGCTCTCCTACAAGCTGGAGGCCAACAGTCAGTGAGAACTGAGGTTCTGCTTGGCCCCTCACCAGGGTCCTTGGGCACCTGGCACTCAAGCACTTTGCACGACTCCCTGCCCACATCTGACAGCTTTCTTCTGGAGCCACTTCCTGCCCCACGGGAAGGAGTTGGGTGGACTGAGCCCTGGACTCATAAGCCTGTTCTTCCTGCTGAAGTCCTCTCCCCCGTGCTCCTTCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015232_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCTGGTAGATGGCTTGG
R:
CCAGCTTGTAGGAGAGCTCGA
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development