HsaEX0052303 @ hg19
Exon Skipping
Gene
ENSG00000108352 | RAPGEFL1
Description
Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:HGNC Symbol;Acc:17428]
Coordinates
chr17:38348858-38351908:+
Coord C1 exon
chr17:38348858-38348945
Coord A exon
chr17:38349615-38349669
Coord C2 exon
chr17:38349916-38351908
Length
55 bp
Sequences
Splice sites
3' ss Seq
CATTCCTTGTCATCTCCCAGCAT
3' ss Score
6.35
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GACCCCTGCAGGAACCACAAAAGCTACCGAGAAGTGATCTCCAAAATGAAGCCCCCTGTGATTCCCTTCGTGCCTCTGATCCTCAAAG
Seq A exon
CATTCAGTGGCCGAAAAAGTGAGGACAATCCGCAAATACCGGAGCCGGCCCCTTT
Seq C2 exon
GCCTGGACATGGAGGCATCCCCCAATCACCTGCAGACCAAGGCCTATGTGCGCCAGTTTCAGGTCATCGACAACCAGAACCTCCTCTTCGAGCTCTCCTACAAGCTGGAGGCAAACAGTCAGTGAGAGTGGAGGCTCCAGTCAGACCCGCCAGATCCTTGGGCACCTGGCACTCAAGCACTTTGCACGATGTCTCAACCAACATCTGACATCTTTCCCGTGGAGCAACTTCCTGCTCCACGGGAAAGAGGTCGATGGATTTACCCCTGGACCCATAAGTCTGTTCATCCTGCTGAAGTCCCCTCCCCATTGCTCCTTCAAGCCAAAACTACACTTTGCTGGTTCCTGTCCCCTCTGAGAAAGGGGATAGAAAGCTCCTTCCTCTATGTCCTCCCATCGAGATCTGTTCTGGGGATGGAGCTTCCAACTTCCTCTTGCAGCAGGAAAGAATGCTGCTCACCCTTCTGTCTTGCAGAGTGGGATTGTGGGAGGGATTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108352_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.7=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCCCTTCGTGCCTCTG
R:
CCTCCAGCTTGTAGGAGAGCT
Band lengths:
142-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)