MmuEX6089480 @ mm10
Exon Skipping
Gene
ENSMUSG00000038020 | Rapgefl1
Description
Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:MGI Symbol;Acc:MGI:3611446]
Coordinates
chr11:98850365-98853697:+
Coord C1 exon
chr11:98850365-98850429
Coord A exon
chr11:98850785-98850839
Coord C2 exon
chr11:98851076-98853697
Length
55 bp
Sequences
Splice sites
3' ss Seq
AATTCCTTGTCGTCTTCCAGCAT
3' ss Score
7.79
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ACCTGACCTTCCTACATGAGGGGAGCAAGACCCTCGTAGATGGTCTGGTGAATATTGAGAAGCTG
Seq A exon
CATTCAGTGGCCGAGAAAGTGAGGACAATCCGAAAATACCGGAGCCGGCCCCTCT
Seq C2 exon
GCCTGGACATGGAGGCATCCCCACATCACCTGCAGACCAAGGCGTACGTGCGCCAGTTCCAGGTCATCGACAACCAGAACCACCTCTTTGAGCTCTCCTACAAGTTGGAGGCTAATAGTCAGTGAGAGTGAGAGGGCCTGGCTGCCCCCGCCTCGGTCCTTGGCACCTGGCACCCAAGCACTTTTGCACGATGCCCTCAACAGACATCGGCCACCTTCTCCCTGGAGGCGTTTCCTATCACAAGGTGGAGTTGGGTTGGCCTACCAGGACCATAAGCCTGCCATCCTGCTGAGGTCCTCTTACCTTGCTCCTTCACACACAAGCTACGCTCCTGGTGGCTGGCCTCTCTGGGCAAGGGACGGAGGAGCACCTCTCTGCTCTCCAAGGGAGGTCTGTTCCAGAGATGGGGTTTCTAGCCCTCACCTCCCATGCAGGAAGGAAGCACCCGCTCCCGGATCACAGCTGTGATGGGAGGCACTGGAAGCCGCCTTCGCGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038020-'14-32,'14-30,17-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCTACATGAGGGGAGC
R:
AGAGGTGGTTCTGGTTGTCGA
Band lengths:
147-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types