RnoEX0004539 @ rn6
Exon Skipping
Gene
ENSRNOG00000027871 | AC141969.1
Description
NA
Coordinates
chr10:86763012-86765675:+
Coord C1 exon
chr10:86763012-86763112
Coord A exon
chr10:86763474-86763528
Coord C2 exon
chr10:86763780-86765675
Length
55 bp
Sequences
Splice sites
3' ss Seq
AATTCCTTGTCATCTCCTAGCAT
3' ss Score
5.52
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TCTGTCCTTACATTTAGCTGTCTTCCTGCTCCTTAGATCTGACCTTCCTACATGAGGGGAGCAAGACCCTCGTGGATGGTCTGGTGAACATTGAGAAGCTG
Seq A exon
CATTCAGTAGCTGAGAAAGTGAGGACAATCCGAAAATACCGGAGCCGGCCCCTCT
Seq C2 exon
GTCTAGACATGGAGGCCTCCCCGCATCACCTCCAGACCAAGGCATATGTGCGCCAGTTCCAGGTCATCGACAACCAGAACCACCTCTTTGAGCTCTCCTACAAGTTGGAGGCCAATAGTCAGTGAGAGCGAGGGGGCCTGGCTGCCCCCACCTAAGTCCTTGGCACCCGGCACTCAAGCACTTTGCACGATGCCCTCAACAACCTACGTTGGAGACCTTCTCCCTGGAGCAATGTCCTGTCCTACAAGGAGGAACTGGGTTGGCCTACCAGGACGTGTCATAAGCCTGTCATCCTGCTGAGGTCTAACCACACTCAAGCTACTCTCCTGGTGTCTGGCCTGGCTGGGCAAGGGATGGGGAGGAGCAACCCTCTGCTCTCTGGGTGAGGTCTATTCCAGAGATGATTCTGGTCTCCACTTCCCACTCGGGAAGGAAGCACTCGCTCCCAGATCACAGCTGTGGTATGGGAGGTACTGGGAGGTACTCGAAGTCTTCTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027871-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCTACATGAGGGGAGC
R:
AGAGGTGGTTCTGGTTGTCGA
Band lengths:
147-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]