BtaEX0030802 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62006873-62015097:+
Coord C1 exon
chr9:62006873-62006982
Coord A exon
chr9:62014816-62014919
Coord C2 exon
chr9:62015009-62015097
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTTTGCCTAAGGTT
3' ss Score
8.06
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAAGATTCTTACCTCTGAAAACAATGTTAGGACCAAGATATGACAGTCAAGTTGCTGAAGAAAATCGATTCCATCCTAGTATGCTTTCAAATTATCTGAAGAGTCTGAAG
Seq A exon
GTTAAAATGGGCTTGTTGGTAGACCTGACAAATACTTCAAGATTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAATATATAAAACTTCAGTGTAAAGG
Seq C2 exon
ACATGGTGAGTGCCCTACAACGGAGAATACTGAGACATTTATTCGTCTGTGTGAGCGGTTTAATGAAAGAAACCCACCTGAACTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(8.3=29.7)
A:
PF0078215=DSPc=FE(25.6=100)
C2:
PF0078215=DSPc=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTCTTACCTCTGAAAACAATGT
R:
AAGTTCAGGTGGGTTTCTTTCA
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development