DreEX0062740 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1094692-1095675:-
Coord C1 exon
chr20:1095566-1095675
Coord A exon
chr20:1094968-1095071
Coord C2 exon
chr20:1094692-1094780
Length
104 bp
Sequences
Splice sites
3' ss Seq
AAGTGCTGATCTGTCCACAGGTG
3' ss Score
8.87
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GTAAATTTCTACCCATGAAAACCATGCTTGGGCCGCGCTATGATGATAAAGTCCCTGAGGAGAACCGGTTTCATCCCAGCATGCTGTCCAACTATCTGAAAAGCTTAAAG
Seq A exon
GTGAAGATGGGTTTACTGGTGGACCTGACCAACACCACCCGCTTCTATGATCGAGCAGACATCGAAAAAGAAGGAATAAAATACGTGAAACTTTCCTGCAAAGG
Seq C2 exon
TCATGGCGAATGCCCGACGGCAGAGACCACAGAGATGTTCATCAGGCTGTGTGAGCACTTCATAGAGAAGACGCCCACAGAGCTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(8.3=29.7)
A:
PF0078215=DSPc=FE(25.6=100)
C2:
PF0078215=DSPc=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCGCGCTATGATGATAA
R:
GATGAGCTCTGTGGGCGTCTT
Band lengths:
170-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]