GgaEX1049777 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78568065-78576190:+
Coord C1 exon
chr3:78568065-78568174
Coord A exon
chr3:78575889-78575992
Coord C2 exon
chr3:78576102-78576190
Length
104 bp
Sequences
Splice sites
3' ss Seq
TAATTGTTTTTATTTCTTAGGTT
3' ss Score
9.37
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAAGTTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
Seq A exon
GTTAAAATGGGTTTGCTGGTCGACTTGACCAACACCAATAGATTCTATGATAGGAACGATATACAGAAAGAGGGGATTAAATATATAAAGCTCCAGTGTAAAGG
Seq C2 exon
ACATGGTGAGTGCCCTACACCTGAGAATACAGAAACATTTATCCGTGTATGTGAACATTTCAGTGAAAAGAATCCCACGGAACTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'3-3,'3-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(9.0=32.4)
A:
PF0078215=DSPc=FE(25.4=100)
C2:
PF0078215=DSPc=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTTTTACCTTTGAAGACAATG
R:
TGAGTTCCGTGGGATTCTTTTCA
Band lengths:
196-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]