RnoEX6021371 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48574660-48579353:+
Coord C1 exon
chr5:48574660-48574769
Coord A exon
chr5:48579080-48579183
Coord C2 exon
chr5:48579265-48579353
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTTTCTTTTTAAAGGTT
3' ss Score
10.83
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAAGATTCTTACCTCTAAAGACAATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGTCTGAAG
Seq A exon
GTTAAAATGAGCTTGTTGGTGGATCTGACAAATACTTCAAGGTTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAGTATATCAAACTTCAGTGTAAAGG
Seq C2 exon
ACATGGTGAGTGCCCCACTACTGAGAACACGGAAACATTCATTCGCCTGTGTGAGAGGTTTAATGAAAGAAGCCCACCTGAGCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'2-4,'2-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(11.2=32.4)
A:
PF0078215=DSPc=FE(25.6=100)
C2:
PF0078215=DSPc=FE(22.6=100)
Main Skipping Isoform:
ENSRNOT00000091827fB12596
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTACCTCTAAAGACAATGCTGGG
R:
CTATAAGCTCAGGTGGGCTTCT
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]