HsaEX6048495 @ hg19
Exon Skipping
Gene
ENSG00000111880 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:10073]
Coordinates
chr6:89638704-89650899:-
Coord C1 exon
chr6:89650790-89650899
Coord A exon
chr6:89638883-89638986
Coord C2 exon
chr6:89638704-89638792
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTTTTTTTTTTTAGGTT
3' ss Score
12.88
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAAGATTCTTACCTCTGAAGACAATGTTAGGACCAAGATATGATAGTCAAGTTGCTGAAGAAAATCGGTTCCATCCCAGCATGCTCTCAAATTACCTAAAGAGCCTAAAG
Seq A exon
GTTAAAATGGGCTTGTTGGTGGACCTGACAAATACTTCAAGGTTCTATGACCGAAATGACATAGAAAAAGAAGGAATCAAATATATAAAACTTCAGTGTAAAGG
Seq C2 exon
ACATGGTGAGTGCCCTACCACTGAGAATACTGAGACCTTTATTCGTCTGTGTGAGCGGTTTAATGAAAGAAATCCACCTGAACTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111880-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(10.7=32.4)
A:
PF0078215=DSPc=PU(26.3=93.9)
C2:
PF0078215=DSPc=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTCTTACCTCTGAAGACAATGT
R:
AAGTTCAGGTGGATTTCTTTCATT
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)