MmuEX0040226 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33320519-33325147:+
Coord C1 exon
chr4:33320519-33320628
Coord A exon
chr4:33324874-33324977
Coord C2 exon
chr4:33325059-33325147
Length
104 bp
Sequences
Splice sites
3' ss Seq
AAATCTGCTTTTTTTTAAAGGTT
3' ss Score
8.42
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAAGATTCTTACCTCTGAAGACGATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGCCTGAAG
Seq A exon
GTTAAAATGAGCTTGTTGGTGGATCTGACAAATACTTCAAGGTTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAGTATATCAAACTTCAGTGTAAAGG
Seq C2 exon
ACATGGCGAATGCCCCACCACTGAGAATACTGAGACATTCATTCGCCTGTGTGAGAGGTTTAATGAAAGAAGCCCACCTGAACTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'4-7,'4-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(9.0=32.4)
A:
PF0078215=DSPc=FE(25.4=100)
C2:
PF0078215=DSPc=FE(22.4=100)
Main Skipping Isoform:
ENSMUST00000029942fB3495
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTCTTACCTCTGAAGACGATGC
R:
AAGTTCAGGTGGGCTTCTTTCA
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types