BtaEX0031623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22411509-22425966:-
Coord C1 exon
chr2:22425767-22425966
Coord A exon
chr2:22422605-22422817
Coord C2 exon
chr2:22411509-22411671
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCTTTCAAAATAGAGG
3' ss Score
7.18
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ACTTGGCCTTGAAAGAGGTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGATTTATTAGAAAAATATGGCCAGGGTGGAAATTGTTCAGAGGGCAGGATGGTATTTAGCTATCACAACAGTTTCCTGATAGCAGATAGAAATGAAGCCTGGATTCTGGAGACTGCAGGAAAGTACTGGGCAGCAGAAAAAGTAGAAG
Seq A exon
AGGGAGTTCGCAATATTTCTAATCAGCTTTCTATAACGACCAAAATTGATCGGGAACACCCAGACATGAGAAACTATGCCAAGCAGAGAGGTTGGTGGGATGGGAAAAAGGAATTCGATTTTGCTGCAACATACTCTTATCTTGACACAGCCAAGATGATGATTTCACCAGGCAGATACTGTGAAGGCTACAAACTTCTGAATAAGCATAAAG
Seq C2 exon
GAAACATAACTTTTGAAACAATGGTGGAAATTCTCCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGATTCCAAACTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.018
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.2=100)
A:
PF0357710=Peptidase_C69=FE(26.7=100)
C2:
PF0357710=Peptidase_C69=PD(6.8=32.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGGTGGAAATTGTTCA
R:
CTCTCAGGATCAGGAGTCCCT
Band lengths:
293-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development