GgaEX0028856 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:18107928-18111412:-
Coord C1 exon
chr7:18111213-18111412
Coord A exon
chr7:18110562-18110774
Coord C2 exon
chr7:18107928-18108090
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCACCTTACAAACAGGTG
3' ss Score
9.49
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCTTGGACTTGAGAGAGCAGACACAGCCGAAAAGGCTCTTACTGTCATAGTTGATTTGCTAGAAAAATACGGCCAGGGAGGAAACTGCATGGAGAGCCACATGGCCTTTACGTACCATAACAGCTTTCTGATAGCCGACAGAAAGGAAGCGTGGGTGCTGGAAACGTCAGGAAAACATTGGGCAGCCGAAAAAGTAGAAG
Seq A exon
GTGGTGTGCGGAATATTTCCAACCAGCTCTCTATCACTACCAAGATTGACAGAGAACATCCGGAGATGAGGGAATATGCCAAAAGCAAGGGCTGGTGGGATGGGGAAAAGGAATTTGATTTTGCTGCCACGTATTCTTATGTAAATACTGCCAGAATGACTACATCCAGGAGCCGCTACTGTGAAGGCTACAAACTTCTGAACAAACATAAAG
Seq C2 exon
GTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.088
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(23.3=100)
A:
PF0357710=Peptidase_C69=FE(24.7=100)
C2:
PF0357710=Peptidase_C69=PD(13.9=70.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGACACAGCCGAAAAG
R:
GTTAGGGTCCTGAGGCAACAC
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]