HsaEX6016790 @ hg19
Exon Skipping
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:30382]
Coordinates
chr2:175265718-175287775:+
Coord C1 exon
chr2:175265718-175265917
Coord A exon
chr2:175268831-175269043
Coord C2 exon
chr2:175287613-175287775
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTCTTTGAAAATAGAGG
3' ss Score
4.44
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ACTTGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAAATATGGCCAGGGTGGAAATTGCACAGAGGGTAGAATGGTATTTAGCTATCACAACAGTTTCCTGATAGCTGATAGGAATGAAGCCTGGATTCTGGAGACTGCAGGGAAGTACTGGGCAGCAGAAAAAGTACAAG
Seq A exon
AGGGAGTTCGTAATATTTCTAATCAACTTTCCATAACAACCAAGATTGCCCGGGAACACCCAGACATGAGAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGTAAAAAGGAGTTTGATTTTGCTGCAGCATATTCCTATCTTGACACAGCCAAGATGATGACTTCATCAGGCAGATACTGTGAGGGCTACAAGCTTCTAAATAAGCACAAAG
Seq C2 exon
GAAATATAACTTTTGAAACAATGATGGAAATTCTTCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGACTCCAGCCTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306-'9-7,'9-5,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.9=100)
A:
PF0357710=Peptidase_C69=FE(26.4=100)
C2:
PF0357710=Peptidase_C69=PD(10.3=38.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGCCTTGAAAGAGCTGA
R:
AAACCATGCTTGCAGTGGTCA
Band lengths:
296-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)