DreEX6034750 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2514482-2518662:-
Coord C1 exon
chr9:2518463-2518662
Coord A exon
chr9:2517015-2517227
Coord C2 exon
chr9:2514482-2514644
Length
213 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCTCTGTCTTAAAGCCG
3' ss Score
7.69
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGG
Seq A exon
CCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACG
Seq C2 exon
GCCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'5-5,'5-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.091
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(29.4=100)
A:
PF0357710=Peptidase_C69=FE(31.1=100)
C2:
PF0357710=Peptidase_C69=PD(12.7=52.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGAAATACGGCCAG
R:
TCTGGAGTGGCGGTGAAGAAG
Band lengths:
299-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]