GgaEX0028856 @ galGal4
Exon Skipping
Gene
ENSGALG00000014270 | SCRN3
Description
secernin 3 [Source:RefSeq peptide;Acc:NP_001244270]
Coordinates
chr7:16407799-16411277:-
Coord C1 exon
chr7:16411078-16411277
Coord A exon
chr7:16410427-16410639
Coord C2 exon
chr7:16407799-16407967
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCACCTTACAAACAGGTG
3' ss Score
9.49
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCTTGGACTTGAGAGAGCAGACACAGCCGAAAAGGCTCTTACTGTCATAGTTGATTTGCTAGAAAAATACGGCCAGGGAGGAAACTGCATGGAGAGCCACATGGCCTTTACGTACCATAACAGCTTTCTGATAGCCGACAGAAAGGAAGCGTGGGTGCTGGAAACGTCAGGAAAACATTGGGCAGCCGAAAAAGTAGAAG
Seq A exon
GTGGTGTGCGGAATATTTCCAACCAGCTCTCTATCACTACCAAGATTGACAGAGAACATCCGGAGATGAGGGAATATGCCAAAAGCAAGGGCTGGTGGGATGGGGAAAAGGAATTTGATTTTGCTGCCACGTATTCTTATGTAAATACTGCCAGAATGACTACATCCAGGAGCCGCTACTGTGAAGGCTACAAACTTCTGAACAAACATAAAG
Seq C2 exon
AAATAGGTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270-'9-5,'9-3,11-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.088
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(23.3=100)
A:
PF0357710=Peptidase_C69=FE(24.7=100)
C2:
PF0357710=Peptidase_C69=PD(13.9=70.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCAGACACAGCCGAAAA
R:
GGACACCATGCTTCCAGTTGT
Band lengths:
292-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]