RnoEX0078707 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60029646-60041171:+
Coord C1 exon
chr3:60029646-60029842
Coord A exon
chr3:60032562-60032771
Coord C2 exon
chr3:60040915-60041171
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCCTTTGCAAATAGGAG
3' ss Score
7.51
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTCGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCTCTCAACGTCATTGTTGACTTATTAGGAAAATATGGCCAAGGTGGAAACTGTGCAGAGGGTGAAGAATTCAGCTATTATAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATTCTGGAGACTTCAGGGAAGTTCTGGGCAGCAGAGAAAGTCCAAG
Seq A exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
Seq C2 exon
GAAACATAACTTATGAAACGATGGTGGAAATTCTTCGCGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACCGCAAGCATGGTTTCCATTTTACCCCAGGATCCCAGCCTTCCCTGCATTCACCTCCTTACAGGGACTCCACACCCTGAGAGGTAAAGTCTCCCAACACTGTGACCACCGAGAGGTCACGGCTGGGGTACAATCATTAGTGTGTAGGTGATTTTTGTCAATACAATTTTTATAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-4/7=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.102
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(26.6=100)
A:
PF0357710=Peptidase_C69=FE(28.2=100)
C2:
PF0357710=Peptidase_C69=PD(7.3=32.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAACTGTGCAGAGGGTG
R:
TGGTCACAGTGTTGGGAGACT
Band lengths:
308-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]