BtaEX0031624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22425767-22429671:-
Coord C1 exon
chr2:22429502-22429671
Coord A exon
chr2:22426719-22426900
Coord C2 exon
chr2:22425767-22425966
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGCTATGACTTTCTTTACAGTGT
3' ss Score
8.38
5' ss Seq
CAGGTTATT
5' ss Score
3.49
Exon sequences
Seq C1 exon
TTAAAAAAAAAATGGAACCTTGTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAATTGATAACAGGATTATTTTTGGGAAAAATTCAGATAGACCCTGTGATGAAGTACAAGAAGTCGTTTATTTTCCTGCTGCAGTTCATGACAACCTGAAGGAACATCTTAAG
Seq A exon
TGTACTTACATAGAAATTGATCAAGTTCCTGAAACATACGCCGTTGTCCTTAGTCGCCCAGCTTGGTTATGGGGAGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAGCTGTATGGGGAAGAGAAAAAGTTTGTGATGAAGAGGCACTACTGGGCATGGACCTTGTCAG
Seq C2 exon
ACTTGGCCTTGAAAGAGGTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGATTTATTAGAAAAATATGGCCAGGGTGGAAATTGTTCAGAGGGCAGGATGGTATTTAGCTATCACAACAGTTTCCTGATAGCAGATAGAAATGAAGCCTGGATTCTGGAGACTGCAGGAAAGTACTGGGCAGCAGAAAAAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(18.0=90.6)
A:
PF0357710=Peptidase_C69=PU(26.6=93.4)
C2:
PF0357710=Peptidase_C69=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGTGGCATTACCTCCAGC
R:
TACCATCCTGCCCTCTGAACA
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development