GgaEX0021026 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:18111213-18112413:-
Coord C1 exon
chr7:18112258-18112413
Coord A exon
chr7:18111903-18112084
Coord C2 exon
chr7:18111213-18111412
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTGCCGCGGCTCGTTGCAGTGC
3' ss Score
4.9
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
CCGCCGCCCCGCTCCTGCGACACCTTTGTGGCGCTGCCGCCCGCCGCCGCCGGGGGCCGGGTGGTGTTCGGGAAGAACTCGGACCGGCCGTCGGACGAGGTGCAGGAGGTGCTGTACGTCCCGGCCGCCGCGCACCCGGCCGGCGCCCAGCTGGAG
Seq A exon
TGCACCTACATCACGGTCGAGCAAGCGGAGCAAACCTACGCCGTGGTCCTGAGCCGCCCGTCGTGGCTGTGGGGCGCAGAGATGGGCGCCAACGAGCACGGGGTGTGCGTCGGGAACGAGGCCGTGTGGGGCCGCGAGGAGGTGTGCGATGCCGAGGCGCTCCTGGGCATGGATCTCGTAAG
Seq C2 exon
GCTTGGACTTGAGAGAGCAGACACAGCCGAAAAGGCTCTTACTGTCATAGTTGATTTGCTAGAAAAATACGGCCAGGGAGGAAACTGCATGGAGAGCCACATGGCCTTTACGTACCATAACAGCTTTCTGATAGCCGACAGAAAGGAAGCGTGGGTGCTGGAAACGTCAGGAAAACATTGGGCAGCCGAAAAAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(16.4=90.4)
A:
PF0357710=Peptidase_C69=FE(20.9=100)
C2:
PF0357710=Peptidase_C69=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGGAAGAACTCGGACCG
R:
CACCCACGCTTCCTTTCTGTC
Band lengths:
247-429
Functional annotations
There are 0 annotated functions for this event