RnoEX0078705 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60026746-60032771:+
Coord C1 exon
chr3:60026746-60026906
Coord A exon
chr3:60028717-60028898
Coord C2 exon
chr3:60032562-60032771
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATGACTTTTCTTTTTACAGTGT
3' ss Score
9.68
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAATGCAGCCCTATTCCTGTGACACGTTTGTGGCATTACCTCCAGCAACAGTTGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTTTCCAGCTGCAGTTCATAGTGATCTGGAAAAACGTCTCAAG
Seq A exon
TGTACTTATATAGAAGTCGATCAGGTTCCTGAAACATATGCTGTTGTTCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTATCTGGGGAAGAGAAGATATTTCTAAGGAGGAGGCACTTCTGGGCATGGACCTTGTCAG
Seq C2 exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-2/7=1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(12.9=60.4)
A:
PF0357710=Peptidase_C69=FE(24.2=100)
C2:
PF0357710=Peptidase_C69=FE(28.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCATTACCTCCAGCAACA
R:
CGAACTCCTCTTTGCCATCCC
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]