DreEX0064616 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2518463-2522238:-
Coord C1 exon
chr9:2522078-2522238
Coord A exon
chr9:2519066-2519247
Coord C2 exon
chr9:2518463-2518662
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTCCATCTGTTCAGTGC
3' ss Score
7.55
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAG
Seq A exon
TGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCG
Seq C2 exon
GCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0357710=Peptidase_C69=PU(26.3=98.4)
C2:
PF0357710=Peptidase_C69=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGGGAAGAACTCGGACA
R:
CAGGCTTCTTTGCGGTCTGAT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]