MmuEX0041319 @ mm10
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73315432-73319499:+
Coord C1 exon
chr2:73315432-73315592
Coord A exon
chr2:73318246-73318427
Coord C2 exon
chr2:73319303-73319499
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATGACTTTTTCTTTTTACAGTGT
3' ss Score
9.46
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAATGGAACCCTATTCCTGTGACACTTTTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAG
Seq A exon
TGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTGTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAG
Seq C2 exon
GCTGGGCCTTGAGAGAGCTGACACGGCTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(12.8=60.4)
A:
PF0357710=Peptidase_C69=FE(24.0=100)
C2:
PF0357710=Peptidase_C69=PD(41.3=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCATTACCTCCAGCAACA
R:
AGCTGAACTCTTTGCCCTCTG
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types