DmeEX6018865 @ dm6
Exon Skipping
Gene
FBgn0037472 | CG10098
Description
This gene is referred to in FlyBase by the symbol DmelCG10098 (FBgn0037472). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:7124548..7126503. Its molecular function is described by: dipeptidase activity. It is involved in the biological process described with: proteolysis. 7 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; pain response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during early pupal stages.
Coordinates
chr3R:7124548-7126503:+
Coord C1 exon
chr3R:7124548-7124806
Coord A exon
chr3R:7124875-7125062
Coord C2 exon
chr3R:7125419-7126503
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCAAACACCTCACATTTCAGACT
3' ss Score
4.46
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TTGGGCAGTGTTGAATAACGTTTGAACCTTAAACAGCTGTGGGAAAAATCAATTTTGCAACTCCCTCGCGCACTTCTGAAGAAACTTCTTCGCGAGAAAAGCACGGATAAAAATGACCAACGGTGACTGCTTTGTTGTTCTGCCCGAGAACTGTGCCGAAGGAACTTTGATCATCGGTCGCAATGCGGAGGACGAAAAAAACGTCAACGTTGCTTCGGAGGTTTGCTTCTACGATGCCACCGAAGTGCTTGAGGGGAAG
Seq A exon
ACTGACGGTGGAGCTTCTGCCGAGACAGGCGGCGATATGTTGCGTGTTATATTGCAAAAACCGCAGCCGGGTCTCTGGGGTGGGGACTTCGGGGCCAATGAACGCGGAGTGGCCCTAGGTCTTACCTGGGCGGCAGGTGAAAACGAGGCCAAGGACAGCGACAGCCTGCTGGGCACGGATATAGTGCG
Seq C2 exon
CTTGACTTTGGCTGTCGCCAAAGATGTGGACGATGCTGTAGACCGGATTGGAGCTTTGGTGGCCAGTCACGGTCACGACAACTCCAAACTAAACTTCATCGCTTGCGATGCAGCTGCTGCCTGGCTTGTGAGTTGCTCTGGCAAGGTATGGGCCGCTGAGAAATTGGAGGCCAGCTTCTTGCGTTTGCCCTCCGGAGGACTGGCTGTGACCACTGTGGTGAACAAGTCAAGCGAGGGATTAGATGACGCTGCCAGTTTTGCCGCTGCTCACGATGCAGAGGCCCAGGCCCCGGCAGTGGATTGGTGTGGTCCCAAGCCAGCTGGCGATGGAACATATACCCAGCACGACATGTTCGAGACGCTGCGATCCGCCAGTAATGCGAGCAGCTCGAGGGCGGCTACCGTTTCGGTGCTGTCGGTGAAGGGAATCTCATGCCATTGGTTCACCGGGACGCCCAATGCCGCCGAGTCTGTGTTTAAGCCGTTCGTTTTTGCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037472-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
PF0341711=AAT=PU(49.5=77.8)
C2:
PF0341711=AAT=PD(49.5=20.2)
Main Inclusion Isoform:
FBpp0081084
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTTTGCAACTCCCTCGCG
R:
CATCGTCCACATCTTTGGCGA
Band lengths:
245-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)