GgaEX1051245 @ galGal4
Exon Skipping
Gene
ENSGALG00000011176 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr2:34391509-34406233:-
Coord C1 exon
chr2:34405771-34406233
Coord A exon
chr2:34395669-34395850
Coord C2 exon
chr2:34391509-34391711
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATTCTCTCTGCCAATGCAGTGC
3' ss Score
5.64
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGGAGACTAAGTAGTTTCATTAAGGTACAGTCATCTTGTCTTCTTTCCTGCTCTGTGTGCCTTCATGAGGCCTGGGTAAAACGTGTCTGAAAATCACCACAGTTCTTTTTATTAAACCCAGATGAGCCTCCTCTGAGCTGATATCATCTTCCACTATCATTACATAATCAACTGGCAATTAGAGGAGACATGATGTCTCTTAGATGCAAAAAATCACAATAGAATTAATGATTCTCTAATGTATGAAATTACAAATTAGTTAAAATTACAAATTACAACAGTTTTAACTTTTTCTTTTTTAGGATGGCTGAAGCTCCTCCAAGTTACTGTTTTGTAGCCTTTCCCCCATGTTCCAAAGATGGGCTGGTGGTGTTTGGAAAGAACTCTGCACGGCCTAGGGATGAAGTACAGGAGGTGGTCTACTTTGCTGCTGCAACTCACGATCCAGGAAGTAAAGTTGAG
Seq A exon
TGCACATATATTGAGATTGAGCAGGTGCCAAAGACTCATGCTGTTGCGCTGAGCAGGCCTTCCTGGCTTTGGGGAGCAGAAATGGGAGCCAATGAGCATGGAGTCTGTATAGCTAATGAAGCTGTCGTGACCAGAGAACCAGCTTCTGAATCTGAAGCCTTGCTTGGAATGGATCTTGTCAG
Seq C2 exon
ACTTGGCCTAGAAAGAGGTTCAACAGCCAAGGAAGCATTGGATGTAATAGTTGCTTTGTTGGAAGAGCATGGGCAAGGAGGAAATTACTATGAAGACGCAAGTTCGTGCCATGCTTTCCAAAGCGCATTTCTGATTGTGGACAGAAATGAAGCCTGGGTACTGGAGACATCTGGAAAGTACTGGGCAGCTGAAAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011176-'0-13,'0-8,7-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(16.1=67.9)
A:
PF0357710=Peptidase_C69=FE(26.9=100)
C2:
PF0357710=Peptidase_C69=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGTCTACTTTGCTGC
R:
CAGCTGCCCAGTACTTTCCAG
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]