MmuEX6004433 @ mm9
Exon Skipping
Gene
ENSMUSG00000019124 | Scrn1
Description
secernin 1 [Source:MGI Symbol;Acc:MGI:1917188]
Coordinates
chr6:54475503-54498377:-
Coord C1 exon
chr6:54498218-54498377
Coord A exon
chr6:54484407-54484588
Coord C2 exon
chr6:54475503-54475705
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGTTTTCTTTTGCAGTGC
3' ss Score
10.81
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGTCTGGCGCGCCTCCAAGTTACTCTTTTGTGGCTCTGCCACCTCGAGCTAAGGACGGTCTGGTGGTATTTGGGAAAAATTCAGCTCGGCCCAGAGATGAAGTCCAGGAGGTTGTGTATTTCCCAGCTGTTGACCATGACGCTGAGAGCAAAGTTGAG
Seq A exon
TGCACTTACATCTCAATCGACCAAGTCCCCAGGACCCACGCCATCGTGATAAGCAGACCTGCCTGGCTCTGGGGGGCAGAAATGGGAGCCAATGAACATGGGGTATGCATAGCCAACGAAGCCATCAATGCCAGAGAACCAGCTGCTGAGACGGAAGCCTTACTGGGAATGGATCTGGTCAG
Seq C2 exon
GCTTGGCTTAGAACGAGGGACAACAGCTAAAGAAGCCCTAGACATCATTGTTTCTTTATTGGATGAGCACGGACAAGGTGGAAATTATTATGAAGATGCCCACTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGACCGAGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019124-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(5.2=18.9)
A:
PF0357710=Peptidase_C69=FE(30.9=100)
C2:
PF0357710=Peptidase_C69=FE(35.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTCTGGTGGTATTTGGGA
R:
GGTCCACCAGCAGATATGCAC
Band lengths:
247-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: