BtaEX6027745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016223 | SCRN1
Description
Bos taurus secernin 1 (SCRN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001110803]
Coordinates
chr4:66807200-66833086:+
Coord C1 exon
chr4:66807200-66807359
Coord A exon
chr4:66825784-66825965
Coord C2 exon
chr4:66832884-66833086
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTTCATTTTTTAGTGC
3' ss Score
10.55
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATGGCTGTAGCTCCTCCAAGTTACTGCTTTGTGGCCTTCCCGCCACGTGCAAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCTCGGCCCAGGGATGAAGTACAAGAGGTTGTGTATTTCTCAGCTGCTGATCATGAACCTGAGAGCAAGGTTGAG
Seq A exon
TGCACTTACATTTCAATCAACCAAGTTCCCAGGACCCATGCCATTGTGATAAGCAGACCTGCATGGCTTTGGGGGGCAGAAATGGGAGCCAATGAACATGGAGTGTGCATAGCCAACGAAGCCATCAATGCCAGAGAACCAGCTGCTGAGACGGAAGCCTTACTGGGGATGGATCTGGTCAG
Seq C2 exon
GCTTGGTTTAGAGAGAGGGGCAACAGCTAAAGAAGCCTTAGACGTCATCGTCGCCTTGTTGGAAGAACATGGACAGGGTGGGAATTATTATGAAGATGCTAACTCCTGCCACAGCTTCCAAAGTGCATTTCTGATTGTGGACCGTGAGGAGGCGTGGGTGCTGGAGACTGTAGGGAAGTACTGGGCTGCAGAGAAGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016223-'5-4,'5-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(13.0=52.8)
A:
PF0357710=Peptidase_C69=FE(27.9=100)
C2:
PF0357710=Peptidase_C69=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGTAGCTCCTCCAAGT
R:
TCCCACCCTGTCCATGTTCTT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]