RnoEX0078697 @ rn6
Exon Skipping
Gene
ENSRNOG00000009636 | Scrn1
Description
secernin 1 [Source:RGD Symbol;Acc:1560999]
Coordinates
chr4:84698307-84722774:-
Coord C1 exon
chr4:84722615-84722774
Coord A exon
chr4:84706701-84706882
Coord C2 exon
chr4:84698307-84698509
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTCTTCCTTTGCAGTGC
3' ss Score
11.2
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGTCTGGTGCACCTCCGAGTTACTCCTTCGTGGCTTTGCCACCTCGAGCCAAGGATGGTCTGGTGGTGTTTGGGAAAAATTCAGCGCGGCCCAGAGATGAAGTGCAGGAGGTCGTGTACTTCCCAGCTGTTGACCATGAAGCTGAGAGCAAAGTTGAG
Seq A exon
TGCACTTACATCTCAATTGACCAAGTTCCCAGGACCCACGCCATAGTGATAAGCAGACCTGCCTGGCTCTGGGGGGCAGAAATGGGAGCCAATGAACATGGGGTATGCATAGCCAATGAAGCCATCAATGCCAGAGAACCAGCTGCTGAGACAGAAGCCTTACTGGGGATGGATCTGGTCAG
Seq C2 exon
GCTTGGTTTAGAACGAGGGACAACAGCTAAAGAAGCCTTAGACATCATCGTCTCCTTATTGGATGAGCATGGACAAGGTGGAAATTATTATGAAGATGCCCATTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGATCGTGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009636_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(7.5=28.3)
A:
PF0357710=Peptidase_C69=FE(30.2=100)
C2:
PF0357710=Peptidase_C69=FE(34.2=100)
Main Skipping Isoform:
ENSRNOT00000013088fB13011
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGTGCAGGAGGTCGTG
R:
TCAGCAGCCCAATACTTCCCT
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]