HsaEX6007609 @ hg19
Exon Skipping
Gene
ENSG00000136193 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:22192]
Coordinates
chr7:29983593-30008684:-
Coord C1 exon
chr7:30008525-30008684
Coord A exon
chr7:29994795-29994976
Coord C2 exon
chr7:29983593-29983795
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTGTTTGTTTTTCAGTGC
3' ss Score
11.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATGGCTGCAGCTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTGATCACGAACCGGAGAGCAAGGTTGAG
Seq A exon
TGCACTTACATTTCAATCGACCAAGTTCCAAGGACCTATGCCATAATGATAAGCAGACCCGCCTGGCTCTGGGGAGCAGAAATGGGAGCCAATGAACATGGAGTGTGCATAGCCAATGAAGCCATCAACACCAGAGAGCCAGCTGCCGAGATAGAAGCCTTGCTGGGGATGGATCTGGTCAG
Seq C2 exon
GCTTGGTTTAGAAAGAGGGGAAACAGCTAAAGAAGCCTTAGATGTCATTGTCTCCTTGTTGGAAGAACATGGACAAGGTGGGAATTACTTTGAAGATGCAAACTCCTGCCACAGCTTCCAAAGTGCATATCTGATTGTGGATCGTGATGAAGCCTGGGTGCTCGAGACCATAGGGAAGTACTGGGCTGCCGAGAAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136193-'4-15,'4-10,6-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(15.7=64.2)
A:
PF0357710=Peptidase_C69=PU(23.3=80.4)
C2:
PF0357710=Peptidase_C69=FE(31.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTTGCCTTCCCTCCACG
R:
CTGTGGCAGGAGTTTGCATCT
Band lengths:
247-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)