BtaEX6088100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001828 | SCRN2
Description
Bos taurus secernin 2 (SCRN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205804]
Coordinates
chr19:39237358-39238851:+
Coord C1 exon
chr19:39237358-39237561
Coord A exon
chr19:39237868-39238049
Coord C2 exon
chr19:39238652-39238851
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCCCTCATCTCCAGTGC
3' ss Score
9.36
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
AGGGACACACGCATCCCCATCTCTCCCCAGATGGCATCGTGGAGCCCTGACACCCCATGTTCCTGCGACTGCTTTGTCTCGGTGCCCCCGGCCTCGGCTCTCCCAGCCGTGATCTTTGCCAAGAACTCTGACCGGCCCCGGGATGAGGTGCAGGAGGTGGTGTTTGTACCGGCAGGCACGCACGCCCCTGGGAGCCGCCTCCAG
Seq A exon
TGCACCTACATTGAGGTGGAACAGGTGTCCAAGACCCATGCTGTGATCCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAACGAGCATGGTGTCTGCATTGGCAATGAGGCAGTGTGGACCAAGGAGCCAGTCGGGGAAGGGGAAGCCCTGCTGGGAATGGACTTACTCAG
Seq C2 exon
GCTGGCTTTGGAACGGGGCAGCTCTGCCCGGGAGGCCTTGCACGTGATCACAGGCTTGCTGGAGCGCTACGGGCAGGGGGGCAGCTGCCGGGAGGACCCCACGCCATTCTGCTACCACAACACTTTCCTGCTGGCCGACCGGACTGAGGCCTGGGTGCTGGAGACGGCGGGGAGGCTGTGGGCTGCACGGAGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001828-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(14.6=52.9)
A:
PF0357710=Peptidase_C69=FE(24.3=100)
C2:
PF0357710=Peptidase_C69=FE(27.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTCCCCAGATGGCATCG
R:
CTCCAGCAAGCCTGTGATCAC
Band lengths:
250-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]